pattern matching problem
raouljp@libero.it
raouljp at libero.it
Mon May 5 11:40:36 UTC 2003
hi,
i need to find a pattern in a set of sequences.
The pattern is like this one:
AATTCNATNCAACGCGAAGA
N is a base which was not be indetifyed.
regexp = ajStrNewC("AATTCNATNCAACGCGAAGA");
match = embPatPosSeqMatchFind( seqCurr, regexp );
where seqCurr is a generic sequence of the set.
This is made for all the seqset;
the problem is, I get the match substrings from all analyzed sequences and this
is the result :
AATTCGATGCAACGCGAAGA
"N" seems to be a jolly char.
I need an exact match but, how ?
by R.J.P.B.
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