Report format
Henrikki Almusa
henrikki.almusa at helsinki.fi
Fri Dec 5 12:04:36 UTC 2003
On Friday 05 December 2003 13:20, Peter Rice wrote:
> The code has widths for each column already.
>
> We need a syntax to give:
>
> 1. minimum column width
> 2. maximum column width (for example, for sequence data that can be very
> long)
>
> Perhaps type:value%n.n=columnheading
Might be good to make it possible to add space within there. Eg. column
heading. Possible ways could be either allow type:value%n.n='column heading'
or add tag_delim to report, which defaults on space or whitespace.
> More questions:
>
> Do we need more column types?
Perhaps name/id tag. Can't figure out much else.
> Do we need a way to define the "standard" tags - to change them or to
> exclude them (excluding could be done with qualifiers, changing needs a
> tag syntax)
This might help. For example 'cusp' could be adapted if the sequence and start
and end points could be dropped. Perhaps this can be done in some report
format, would need to check.
I think there is those '-noscore' etc which do similar thing. Of course all
"standard" tags then need to be named and added to there.
--
Henrikki Almusa
More information about the emboss-dev
mailing list