Transeq

[Peter Rice]

Mick Watson wrote:
> 
> In this instance I really wanted the first part of the fasta line to stay the
> same - I realise that it doesn't anyway die to the "_1" which is appended -
> so now as well as removing that I am also putting the "gnl|UG|" part back on
> the front too!
> 
> My first instinct would be to just leave the fasta line alone other than to
> simply append _# to the translation......

It is a very small change to allow the following:

transeq nucleic.seq -osf ncbi protein.pep -osdb UG

This would replace the "unk" with "UG" in your NCBI output.

Probably will be available in EMBOSS 2.5

regards,

Peter

-- 
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Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723