Lists, selections & defaults
James Bonfield
jkb at mrc-lmb.cam.ac.uk
Wed Feb 14 15:01:12 UTC 2001
Some more ACD questions. If I've missed something in the documentation then
please point me to it, otherwise please note it as a request for documentation
improvements.
For the list type, what value should default have? I've seen examples thus:
showseq.acd:
list: things [
default: "B N T S F"
values:
"S:Sequence,
B:Blank line,
1:Frame1 translation,
2:Frame2 translation,
3:Frame3 translation,
...
ajbad.acd: (is this deliberately a badly formatted acd file?
list: frames [
default: "1,2,3,4,5,6"
values: "0: None, 1: F1,2: F2,3: F3,4: R1,5: R2,6: R3"
...
dbiblast.acd:
List: seqtype [ req: Y
prompt: "Sequence type"
value: "N:nucleic;P:protein;?:unknown"
max: 1 min: 1 def: unknown
]
So the default is sometimes the 'code' (as in showseq.acd) and sometimes the
'value' (dbiblast.acd). When default is a list, sometimes it is space
separated, and sometimes command separated.
How should I be parsing this?
James
--
James Bonfield (jkb at mrc-lmb.cam.ac.uk) Tel: 01223 402499 Fax: 01223 213556
Medical Research Council - Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 2QH, England.
Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/
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