-sreverse and feature tables
gwilliam at hgmp.mrc.ac.uk
gwilliam at hgmp.mrc.ac.uk
Wed Feb 14 10:37:14 UTC 2001
Peter,
Currently when you do a -sreverse, the feature table(s) of the reversed
sequence(s) are not also reversed (start and end positions changed to be
length-start+1, length-end+1 and sense negated).
This is shown when you do
% showseq em:hsfau1 -format=2 stdout
and
showseq em:hsfau1 -format=2 stdout -srev
(The sequence gets reverse-complemented, but the feature table stays the
same and so inappropriate regions are indicated in the display)
Thanks,
Gary
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