-sreverse and feature tables

gwilliam at hgmp.mrc.ac.uk gwilliam at hgmp.mrc.ac.uk
Wed Feb 14 10:37:14 UTC 2001


Currently when you do a -sreverse, the feature table(s) of the reversed
sequence(s) are not also reversed (start and end positions changed to be
length-start+1, length-end+1 and sense negated).

This is shown when you do

% showseq em:hsfau1 -format=2 stdout


showseq em:hsfau1 -format=2 stdout -srev

(The sequence gets reverse-complemented, but the feature table stays the
same and so inappropriate regions are indicated in the display)


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