abiview bug

James Bonfield jkb at mrc-lmb.cam.ac.uk
Tue Feb 13 19:16:14 UTC 2001

I'm getting assertion failed in quite a few ABI3100 files with
abiview. Unfortunately these files are not public so I cannot make them
available to the emboss-dev team. So are there any obvious ways I can provide
more debugging info? (Except for this:)

Uncaught exception
 Assertion failed
 raised at ../../ajax/ajmem.c:78

   EMBOSS An error in ../../ajax/ajexcept.c at line 56:

By breaking at _exit I get:

#0  0x40486ca0 in _exit () from /lib/libc.so.6
#1  0x40405085 in exit () at exit.c:82
#2  0x40171846 in ajMessCrashFL ()
#3  0x4015e1ee in ajExceptRaise ()
#4  0x40170c4d in ajMemCalloc ()
#5  0x40170cfb in ajMemCalloc0 ()
#6  0x4012ab2c in ajGraphxyDataNewI ()
#7  0x8049859 in graphDisplay ()
#8  0x804962f in main ()
#9  0x403f1b5c in __libc_start_main (main=0x804932c <main>, argc=2, 
    ubp_av=0xbffff0e4, init=0x8048e70 <_init>, fini=0x8049b7c <_fini>, 
    rtld_fini=0x4000d634 <_dl_fini>, stack_end=0xbffff0dc)
    at ../sysdeps/generic/libc-start.c:129

Alas this is compiled with the standard cc -O options, but if this isn't a
known issue then I can try producing a debug version. 

James Bonfield (jkb at mrc-lmb.cam.ac.uk)   Tel: 01223 402499   Fax: 01223 213556
Medical Research Council - Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 2QH, England.
Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/

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