pepwindow bugs?

[James Bonfield]

I'm having trouble getting pepwindow to look anything like the results produce 
using xpip's (OLD code!) Kyte & Doolittle implementation.

For an easier example than xpip (which is available from our ftp site, but I
don't expect many to have it) also try looking at the java program at:

http://arbl.cvmbs.colostate.edu/molkit/hydropathy/

On the demo sequence there xpip and this java app give essentially identical
results, while pepwindow gives something looking VERY different. Any
explanations?

James

-- 
James Bonfield (jkb at mrc-lmb.cam.ac.uk)   Tel: 01223 402499   Fax: 01223 213556
Medical Research Council - Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 2QH, England.
Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/