[DAS] DAS Digest, Vol 59, Issue 2

[Jose-Ramon Macias]

Hi Jonathan,
I won't be able to attend physically, but would be very interested in any development regarding JDAS and the replacement for DasObert. Could I contribute from the distance ? How ? I'll be eager to test the resulting stuff, anyway.


On Nov 3, 2011, at 17:00, das-request at lists.open-bio.org wrote:

> Send DAS mailing list submissions to
> 	das at lists.open-bio.org
> 
> To subscribe or unsubscribe via the World Wide Web, visit
> 	http://lists.open-bio.org/mailman/listinfo/das
> or, via email, send a message with subject or body 'help' to
> 	das-request at lists.open-bio.org
> 
> You can reach the person managing the list at
> 	das-owner at lists.open-bio.org
> 
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of DAS digest..."
> 
> 
> Today's Topics:
> 
>   1. Java DAS hackathon 1st December. (Jonathan Warren)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Wed, 2 Nov 2011 15:57:15 +0000
> From: Jonathan Warren <jw12 at sanger.ac.uk>
> Subject: [DAS] Java DAS hackathon 1st December.
> To: das at biodas.org
> Message-ID: <28054914-049C-4F9F-BC19-BD299DA41A3E at sanger.ac.uk>
> Content-Type: text/plain;	charset=US-ASCII;	format=flowed;	delsp=yes
> 
> Hi
> 
> There are at least 4 of us meeting up on the Sanger/EBI genome campus  
> (Thursday 1st December) to write some code for the new Java DAS  
> library (JDAS http://code.google.com/p/jdas/).
> The main focus will be on making sure the new library has all the  
> "essential" capabilities of the old Dasobert library and some new  
> features.
> 
> We would like to extend an open invitation to Java developers in the  
> DAS community. If you would like to attend and contribute then please  
> drop me a line. We would be especially interested in having someone  
> with expertise/interest in DAS structure or Alignment clients.
> If you have any suggestions or burning needs for support to be  
> included in the JDAS library you can also write to me or post to the  
> list.
> 
> For inclusion (some of which has/will be implemented by 1 December):
> Support for concurrency (Threads and queue management).
> Support for alignment and structure queries/responses.
> JSON support.
> Writeback functionality (xml and JSON).
> Registry sources filtering support.
> Support for reading/writing JSON.
> 
> As always any contributions and suggestions welcome.
> After the hackathon we would also welcome any offers of testing in  
> real world situations?
> 
> Many thanks
> 
> The Sanger/EBI DAS team.
> 
> 
> Jonathan Warren
> Senior Developer and DAS coordinator
> blog: http://biodasman.wordpress.com/
> jw12 at sanger.ac.uk
> Ext: 2314
> Telephone: 01223 492314
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> -- 
> The Wellcome Trust Sanger Institute is operated by Genome Research 
> Limited, a charity registered in England with number 1021457 and a 
> company registered in England with number 2742969, whose registered 
> office is 215 Euston Road, London, NW1 2BE. 
> 
> 
> ------------------------------
> 
> _______________________________________________
> DAS mailing list
> DAS at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/das
> 
> 
> End of DAS Digest, Vol 59, Issue 2
> **********************************

Jose-Ramon Macias

Unidad de Biocomputación
Centro Nacional de Biotecnología (CNB-CSIC)
Darwin, 3. 28049 Madrid.