[DAS] GenoPub GenoViz DAS/2 Server
gregghelt at gmail.com
Tue Sep 14 00:24:53 UTC 2010
Congrats on the paper David!
On Sun, Sep 12, 2010 at 7:12 AM, David Nix <David.Nix at hci.utah.edu> wrote:
> Hello Folks,
> I wanted to point folks to our recently published DAS/2 paper,
> http://www.biomedcentral.com/1471-2105/11/455 .
> It details three software applications developed for our Microarray/ Next
> Generation Sequencing and Bioinformatics Core facilities. One of which is a
> web app DAS/2 server that provides, among other things, a user friendly
> interface to the Genoviz DAS/2 server and the ability to distribute both
> public and private datasets. This is a light weight application that we
> hope people will install in their labs and at their institutions and use to
> distribute massive genomic datasets. The use of alternative formats,
> including several binary file types, accelerates the delivery of genomic
> data more than 100x relative to DAS XML.
> Currently, 25 laboratories at the University of Utah are using GenoPub and
> the Integrated Genome Browser to distribute and visualize ~1100 genomic
> datasets. We are also publically hosting ~600 chIP-chip, chIP-seq, and
> transcriptome datasets from a variety of sources including signal and
> chIP-seq peak calls from the UCSC ENCODE project and several large chIP-seq
> mapping projects (Barski et al. Mikkelsen et al.).
> Here are some relevant links:
> * Our production server:
> http://bioserver.hci.utah.edu:8080/DAS2DB/genopub (guest login: as
> "guest", pw: "guest")
> * A demo server you can modify:
> http://diserafed.hci.utah.edu:8080/das2genopub/genopub (login:
> "test.user", pw: "test"
> * Our wiki describing how to upload annotations into GenoPub as well as
> install your own server:
> * This software is part of the open source GenoViz project:
> http://sourceforge.net/projects/genoviz/ .
> I can also provide folks with temporary user accounts on our production
> server if they would rather hold off on instantiating their own DAS/2
> -cheers, D
> David Austin Nix, PhD | Bioinformatics Shared Resource | Huntsman Cancer
> Institute | 2000 Circle of Hope | SLC, UT 84112 | Rm: 3165 | Vc:
> 801.587.4611 | Fx: 801.585.6458 | david.nix at hci.utah.edu | Skype/iChat:
> LiveNix | WebSite: http://bioserver.hci.utah.edu | DAS/2:
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