[DAS] [Bioperl-l] Getting all annotations

[Dan Bolser]

2009/9/24 Emanuele Osimo <e.osimo at gmail.com>:
> Dear Dan,
> DAS is really interesting. Tomorrow I'll have a close look at it with a
> bioinformatician.
> Do you have any answer to this?
> http://www.biodas.org/wiki/Talk:Everything_DAS


Hi Emanuele,

Glad I could help!

Indeed the Perl script on the above page looks very problematic (clear
layout errors). However, I don't know the details of the script, so I
can't advise on the specific problem that you see after getting it to
run.

I'd suggest that you ask your questions on the DAS mailing list (CC'ed
in this email).


Cheers,
Dan.

> Thanks
> Emanuele
>
>
> On Sun, Sep 20, 2009 at 17:09, Dan Bolser <dan.bolser at gmail.com> wrote:
>>
>> Hi Emanuele,
>>
>> I guess you were Emos in irc://irc.freenode.net/#bioperl ?
>>
>>
>> I think the answer to your question can be found here:
>>
>> http://www.biodas.org
>>
>>
>> All the best,
>> Dan.
>>
>> 2009/9/18 Emanuele Osimo <e.osimo at gmail.com>:
>> > Hello,
>> > I was trying to figure out how to get from the Entrez database all the
>> > reference annotation for a given genomic zone.
>> > For example: I want to know which genes, transcripts, microRNAs etc are
>> > present in chr 6 from 100kbp to 200kbp.
>> > Is there a database that is arranged as a continuum (by sequence)
>> > instead of
>> > by feature (gene, transcript etc)?
>> >
>> > Thanks
>> > Emanuele
>> > _______________________________________________
>> > Bioperl-l mailing list
>> > Bioperl-l at lists.open-bio.org
>> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
>> >
>
>