[DAS] Scaling of DAS tracks

[Andy Jenkinson]

Ah I misunderstood the problem. Now I understand! The link to Ensembl - 
on- the http://www.dasregistry.org/spec_1.53E.jsp page...

That link is no longer valid, as the information is in the 1.53E  
documentation.

On 14 Sep 2009, at 10:27, Andy Jenkinson wrote:

> That's odd, is the registry having any problems? I'm assuming the  
> URL is correct since it works for me! (still working)
>
> On 14 Sep 2009, at 10:18, Jonathan Warren wrote:
>
>> Hi Andy
>>
>> Gives a 404 for me as well..
>>
>> On 14 Sep 2009, at 09:49, Andy Jenkinson wrote:
>>
>>> Hi Christian,
>>>
>>> Did you use the 'max' and 'min' properties? These tell the client  
>>> how to scale the data, otherwise it can only use the values it  
>>> receives for any one region to guess what they are. Ensembl makes  
>>> no assumptions that the scale for one track is the same for  
>>> another, and in the absence of explicit min/max values assumes  
>>> that the maximum is the highest score it received, and the minimum  
>>> is the lowest.
>>>
>>> If however the maximum height of the track itself is different  
>>> (i.e. the height in pixels of the label region) this must be  
>>> something else. If you show me the stylesheet and features  
>>> response I can take a look for you.
>>>
>>> The documentation link you posted works for me, is it still giving  
>>> a 404? In any case, I believe Ensembl supports all of the  
>>> stylesheet functions in the specification.
>>>
>>> Cheers,
>>> Andy
>>>
>>> On 11 Sep 2009, at 16:46, Christian Ruckert wrote:
>>>
>>>> I have provided a histogram stylesheet for my DAS tracks, as  
>>>> described at http://www.dasregistry.org/extension_stylesheet_histogram.jsp 
>>>> .
>>>>
>>>> Now when viewing my tracks in ensembl I have problems with the  
>>>> correct scaling. One track is displayed twice as high as the  
>>>> other, despite the score values are only half as high.
>>>>
>>>> Is there some documentation which stylesheet commands are  
>>>> supported by ensembl. The link to the ensembl stylesheet  
>>>> convention at http://www.dasregistry.org/spec_1.53E.jsp returns a  
>>>> 404 error.
>>>>
>>>> Thanks,
>>>> Christian
>>>> _______________________________________________
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>>>
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>>
>> Jonathan Warren
>> Senior Developer and DAS coordinator
>> jw12 at sanger.ac.uk
>> Ext: 2314
>> Telephone: 01223 492314
>>
>>
>>
>>
>>
>>
>>
>> -- 
>> The Wellcome Trust Sanger Institute is operated by Genome  
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>
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