[DAS] Problem in extracting chromsome from gbk formatted flatfile of Ciona intestinalis

[Steve Chervitz]

Ramkumar,

I'd recommend addressing your question to Ensembl at helpdesk at ensembl.org
since this seems to be specific to their data format.

Steve

> From: Ramkumar Sundaram <siyasriram at gmail.com>
> Date: Thu, 14 Dec 2006 15:13:40 +0530
> To: <das at lists.open-bio.org>
> Subject: [DAS] Problem in extracting chromsome from gbk formatted flatfile of
> Ciona intestinalis
> 
> Hello Sir/Madam,
> 
> I downloaded genbank formatted flat files from for Ciona intestinalis from
> the ftp url :
> ftp://ftp.ensembl.org/pub/current_ciona_intestinalis/data/flatfiles/genbank/
> .
> 
> When I tried to extract chromosome number (1P, 1Q........) for a particular
> gene id I was not able to find the chromosome field in the downloaded .dat
> files. Could you please tell me How to extract chromosome number from
> downloaded .dat files?
> 
> I would be helpful if you help me in my ongoing research.
> 
> Regards,
> 
> Ramkumar.S
> Bioinformatics Programmer,
> Asenterra Systems Pvt. Ltd.
> Chennai-600096.
> India.
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