[DAS] Question about empty page and dazzlecfg.xml configuration
Selmar Leeuwenburgh
project4.bioinformatics at erasmusmc.nl
Mon Jul 12 04:46:00 EDT 2004
Hi,
I have a, probably very easy to solve, problem. I am at the moment
trying to install dazzle on tomcat 5.0.25. i am reading the setting up
a Ensembl DAS Server from www.ensembl.org/Docs/das_server_v1.2.pdf
<http://www.ensembl.org/Docs/das_server_v1.2.pdf>. I am now on page 6 in
the last part of step5. I read there if you get an error message or an
empty page then check the servlet error log for the source of the
problem. 98 % of the problems are related to errors in the configuration
of the Dazzle webapp (i.e. In the dazzlecfg)
So i get an directory listing when i typ http://localhost:8080/das/ as
url in the address bar. Do you know what i need to add or change in the
dazzlecfg.xml?
With kind regards,
Selmar.
The current dazzlecfg.xml from my /usr/dazzle/dazzle-webapp-1.01 directory:
<!--
Example configuration file for the Dazzle servlet.
Please check all paths and URIs before deploying this on
your own server.
Information of configuring and deploying Dazzle can
be found at:
http://www.biojava.org/dazzle/
Alternatively, questions can be mailed to:
Thomas Down <td2 at sanger.ac.uk>
-->
<dazzle xmlns="http://www.biojava.org/2000/dazzle">
<!-- Test reference server -->
<datasource id="test"
jclass="org.biojava.servlets.dazzle.datasource.EmblDataSource">
<string name="name" value="Test seqs" />
<string name="description" value="Test set for promoter-finding software" />
<string name="version" value="default" />
<string name="fileName" value="test.embl" />
<string name="stylesheet" value="test.style" />
</datasource>
<!-- Test annotation server. Note that the mapMaster property must
be changed to match your reference server -->
<datasource id="tss"
jclass="org.biojava.servlets.dazzle.datasource.GFFAnnotationSource">
<string name="name" value="TSS" />
<string name="description" value="Transcription start sites" />
<string name="version" value="default" />
<string name="fileName" value="fickett-tss.gff" />
<boolean name="dotVersions" value="true" />
<string name="mapMaster" value="http://localhost:8080/das/test/" />
<string name="stylesheet" value="tss.style" />
</datasource>
</dazzle>
directory listing of /usr/tomcat/jakarta-tomcat-5.0.25/webapps
balancer/ das/ das.war jsp-examples/ ROOT/ servlets-examples/
tomcat-docs/ webdav/
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