[DAS] Displaying introns in ensembl-das.

[Lincoln Stein]

Hi Tony,

As long as you're doing a magic list, you might as well check for "CDS" 
features too -- that's a common one.

The 1.6 spec has the concept of a separator glyph associated with the group.  
The next time you play with the stylesheet support, you might want to look 
into this since it would be a way to provide bumpy introns without the 
special casing.

Lincoln

On Tuesday 25 June 2002 03:25 am, Tony Cox wrote:
> On Mon, 24 Jun 2002, David He wrote:
>
> Hi David,
>
> This is a simple (though not intuitive) one to solve. Ensembl will draw
> bumpy intron automatically between certain type of DAS features. If you set
> the feature "type" to be either "transcript" or "exon" (case is
> unimportant) then it will automtically draw bumpy introns between features
> with the same ID.
>
> regards
>
> Tony
>
>
> +>Hi all,
> +>
> +>I was wondering if anyone here could provide me with some information on
> +>how to display introns in the style of the ensembl genscan track (ie.,
> +>as a ^ shape rather than a rectangle) using my own DAS server. Currently
> +>I have an ensembl-DAS server set up using the generic adaptor. The only
> +>problem is that this can only serve up rectangles for all features. I
> +>have done a cursory check of the biodas archives but did not find any
> +>information on this matter. My apolegies if this question has already
> +>been asked and answered. Once again, thanks for any help you can provide.
> +>
> +>Sincerely,
> +>David
> +>
> +>--
> +>David He
> +>Bioinformatics Core Facility
> +>Ctre for Molecular Medicine and Therapeutics
> +>University of British Columbia                  http://www.cmmt.ubc.ca
> +>
> +>
> +>_______________________________________________
> +>DAS mailing list
> +>DAS@biodas.org
> +>http://biodas.org/mailman/listinfo/das
> +>
>
> ******************************************************
> Tony Cox			Email:avc@sanger.ac.uk
> Sanger Institute		WWW:www.sanger.ac.uk
> Wellcome Trust Genome Campus	Webmaster
> Hinxton				Tel: +44 1223 834244
> Cambs. CB10 1SA			Fax: +44 1223 494919
> ******************************************************
>
> _______________________________________________
> DAS mailing list
> DAS@biodas.org
> http://biodas.org/mailman/listinfo/das

-- 
========================================================================
Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
========================================================================