[DAS] Dazzle with Ensembl 3.26.1

jfreeman jfreeman@variagenics.com
Thu, 14 Feb 2002 18:00:36 -0500


Hi Thomas,

The:

http://www.biojava.org/download/ensembl-das/

website as of 2/14/2002, 18:00 EST -0600 seems to be down, (or just
overloaded :))

Thank you very much for this,

Jim Freeman


Thomas Down wrote:
> 
> On Thu, Feb 14, 2002 at 06:10:45PM -0000, Stefano Tine wrote:
> >
> > Dazzle 0.94
> > Tomcat 3.3
> > Ensembl 3.26.1 (but human_trace.pm and mouse_trace.pm
> > are missing/not distributed, this was downloaded a couple
> > days after 3.26.1 was released)
> >
> > Looking forward to the new package
> 
> It's up now, in:
> 
>     http://www.biojava.org/download/ensembl-das/
> 
> Grab:
> 
>     ensembl-das-webapp-20020214.tar.gz
> 
> You should be able to use exactly the same configuration
> as with any other recent version.  The only changes are:
> 
>    - For the ensembl bridge, schemaVersion settings of less
>      that 80 are now treated as `official' versions.  The only
>      one current recognized is version 3.  For connecting to
>      older databases, old style versions in the range 80-130
>      are still supported.
> 
>    - You can create datasource aliases, as in the example Tony
>      posted earlier.
> 
> > (or I will try upgrading Tomcat as last resource)
> 
> I really would try getting rid of Tomcat 3.3.  We've had a /lot/
> of reported problems with that container, which always seem to
> go away when users either upgrade or downgrade.  I really don't
> know what's causing this (maybee some very subtle ClassLoader
> bug?), but I know it's bad news...
> 
> Good luck!
> 
>     Thomas.
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