[DAS] Dazzle with Ensembl 3.26.1

[Tony Cox]

On Mon, 11 Feb 2002, Stefano Tine wrote:

I presume you are using the mose recent dazzle available? - this has fixes
for changes in the way Ensembl names chromosomes internally (simply
"N" rather than "chrN"). Can you send me your dazzlcfg.xml file please? I'll see
if I can see what the problem is. Is there any error message coming out of
dazzle.

By way of comment, Tomcat 3.3 is commonly accepted to be pretty grim. We use
either 3.2 or 4.0 for the public facing services.

regards

Tony


+>
+>Hi, thanks for your reply.
+>
+>Well, we have Dazzle 0.94 + Tomcat 3.3
+>and all works ok with 1.2.0 but when I change
+>dazzlecfg.xml to point to 3.26 rather than 1.2
+>then Ensembl 3.26 takes a long time to load our 
+>DAS services.
+>
+>In the error_log for Ensembl 3.26.1 I see: 
+>
+>
+>UNDEF ON ENSEMBL_DAS_PROXY [Homo_sapiens]
+>Added internal DAS source: test1 (Proxy:)
+>UNDEF ON ENSEMBL_DAS_PROXY [Homo_sapiens]
+>UNDEF ON ENSEMBL_DAS_PROXY [Homo_sapiens]
+>Added internal DAS source: test2 (Proxy: )
+>UNDEF ON ENSEMBL_DAS_PROXY [Homo_sapiens]
+>then errors that can't find human_trace.pm and mouse_trace.pm (twice)
+>URL/DSN:  ... /8080/das/test1
+>(long wait)
+>URL/DSN:  ... /8080/das/test2
+>(long wait)
+>LONG PROCESS  PID:      11512      DT: Mon Feb 11 17:58:22 2002      Time:
+>61
+>
+>
+>This same page loads in a few secs with Ensembl 1.2.0 (and
+>dazzlecfg.xml pointing to 1.20).
+>
+>So maybe Dazzle is ok but ExternalDAS.pm is doing
+>something weird (like looking for a Proxy and hanging
+>there)? Not a question for the DAS list, I guess, but on the
+>Ensembl list I asked this time ago and got no reply ;-)
+>
+>What am I doing wrong? Thanks a lot in advance
+>
+>Stefano
+>
+>
+>-----Original Message-----
+>From: Tony Cox [mailto:avc@sanger.ac.uk]
+>Sent: Monday, February 11, 2002 1:38 PM
+>To: Stefano Tine
+>Cc: das@biodas.org
+>Subject: Re: [DAS] Dazzle with Ensembl 3.26.1
+>
+>
+>On Mon, 11 Feb 2002, Stefano Tine wrote:
+>
+>+>
+>+>Hello,
+>+>  just wondering if there is any plan to update
+>+>Dazzle for use of the Ensembl 3.26.1 schema in the
+>+>near future. 
+>
+>the Sanger DAS server uses the latest dazzle which supports 3_26_1
+>
+>Tony
+>
+>
+>+>
+>+>Thanks
+>+> Stefano
+>+>_______________________________________________
+>+>DAS mailing list
+>+>DAS@biodas.org
+>+>http://biodas.org/mailman/listinfo/das
+>+>
+>
+>******************************************************
+>Tony Cox			Email:avc@sanger.ac.uk
+>Sanger Institute		WWW:www.sanger.ac.uk
+>Wellcome Trust Genome Campus	Webmaster
+>Hinxton				Tel: +44 1223 834244
+>Cambs. CB10 1SA			Fax: +44 1223 494919
+>******************************************************
+>
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+>

******************************************************
Tony Cox			Email:avc@sanger.ac.uk
Sanger Institute		WWW:www.sanger.ac.uk
Wellcome Trust Genome Campus	Webmaster
Hinxton				Tel: +44 1223 834244
Cambs. CB10 1SA			Fax: +44 1223 494919
******************************************************