[BioSQL-l] Can I load ontologies into BioSQL?

[Carlos A. Canchaya]

Hi guys

I'm working with biosql and I try to figure out how to load ontologies  
into biosql.

I've tried

load_ontology.pl   --driver mysql --dbuser carlos --dbpass xxx --host  
localhost --dbname biosql --namespace "Gene Ontology" --format goflat  
--fmtargs "-defs_file,GO.defs"  function.ontology process.ontology  
component.ontology

as in the script info but I have an error,


------------------- WARNING ---------------------
MSG: DBLink exists in the dblink of _default
---------------------------------------------------

------------- EXCEPTION -------------
MSG: format error (file process.ontology) offending line:
      -negative regulation of angiogenesis ; GO:0016525 ; synonym:down  
regulation of angiogenesis ; synonym:down\-regulation of  
angiogenesis ; synonym:downregulation of angiogenesis ;  
synonym:inhibition of angiogenesis % negative regulation of  
developmental process ; GO:0051093 % regulation of angiogenesis ; GO: 
0045765

STACK Bio::OntologyIO::dagflat::_parse_flat_file /usr/local/share/perl/ 
5.10.0/Bio/OntologyIO/dagflat.pm:627
STACK Bio::OntologyIO::dagflat::parse /usr/local/share/perl/5.10.0/Bio/ 
OntologyIO/dagflat.pm:284
STACK Bio::OntologyIO::dagflat::next_ontology /usr/local/share/perl/ 
5.10.0/Bio/OntologyIO/dagflat.pm:317
STACK toplevel /usr/local/share/biosql/bioperl-db/scripts/biosql/ 
load_ontology.pl:604
-------------------------------------

Any suggestion?

Cheers,

Carlos