[BioSQL-l] Examples of queries - help for beginners!!

[Hilmar Lapp]

I agree - but the answers aren't necessarily simple.

For instance, to take your example, you'd have to write a bioperl-db 
adaptor first for the structure modules in bioperl to get them 
serialized to biosql, adapt load_seqdatabase.pl or create a clone that 
would load structures instead of Bio::Seq's, establish a method that 
links structures to their protein entries in biosql, and then you could 
finally look at how to constrain for the date of entry.

	-hilmar


On Monday, April 11, 2005, at 01:28  AM, SG Edwards wrote:

>
> Hi everyone,
>
> (following on from the post about genbank exons) I would be interested 
> to know
> if there is somewhere that contains a list of example queries for use 
> with
> BioSQL, for example, if you want all proteins that were entered before 
> 2000 and
> have a PDB structure => "do this query".
>
> This would be an extremely helpful tool for people who are new to the 
> SQL
> language (like me!) and would make BioSQL a far more accessible tool.
>
> Thanks,
>
> Stephen
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>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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