[BioSQL-l] help with load_seqdatabase.pl

Ulat, Victor (IRRI) v.ulat at cgiar.org
Thu Jul 31 03:27:49 EDT 2003


Hi,

I am trying to load a genbank formatted sequence to biosql(win2k, perl 5.6,
mysql 4.x, bioperl 1.2.2 and the recent bioperl-db)using
load_seqdatabase.pl, I am using the following arguments:

"C:\BioSQL>perl load_seqdatabase.pl -host localhost -dbname testdb -driver
mysql -namespace genbank -format genbank NC_000913.gbk"

This message appears: "Loading NC_000913.gbk ..." followed by "Can't call
method "rollback" on an undefined value at load_seqdatabase.pl line 451,
<GEN0> line 163306"

Many thanks in advance,

Victor




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