[BioSQL-l] Two quickies: bioentry_dbxref, dbxref_qualifier_value

Hilmar Lapp hlapp at gnf.org
Wed Jul 2 16:41:16 EDT 2003



> -----Original Message-----
> From: Yves Bastide [mailto:Yves.Bastide at irisa.fr] 
> Sent: Wednesday, July 02, 2003 3:27 PM
> To: biosql
> Subject: [BioSQL-l] Two quickies: bioentry_dbxref, 
> dbxref_qualifier_value
> 
> 
> Hi,
> 
> * shouldn't bioentry_dbxref.rank be NOT NULL DEFAULT 0?

No because it's not in the unique key constraint. It's just for ordering
if the order is important to you.

> 
> * dbxref_qualifier_value: is it for storing things like
> DR   EMBL; M29954; AAA18217.1; -.
> and
> RX   MEDLINE=94143497; PubMed=8310077;
> ?

Yes it is. Bioperl-db doesn't support storing the secondary accession
yet though. I don't know about bio{java,python,ruby} in this regard.

	-hilmar

> 
> Thanks,
> 
> yves
> 
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