[BioSQL-l] molecule & alphabet

Hilmar Lapp hlapp@gnf.org
Sun, 8 Sep 2002 00:07:59 -0700


I believe biosequence.molecule in the biosql schema maps to 
PrimarySeqI::alphabet. at least that's what the adaptor code tells.

- If this is true, Bio::Seq::RichSeqI::molecule is not 
round-tripped. Does anyone care about serializing this attribute? If 
yes, I'd add it as a column.

Also, I propose to fix the naming of column biosequence.molecule. 
Objections?

	-hilmar
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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