[BioRuby] question about my first biogem install

[Naohisa GOTO]

Hi,

It seems that the "bio-gem" package (which provides "biogem" command)
and its documentation (http://www.biogems.info/doc/Tutorial_rdoc.html)
is outdated.

For creating own gem package from now, I think using Bundler's
"bundle gem" command is recommended.

The following documentation provided by Bundler and Rubygems
official sites may be helpful.
https://bundler.io/v2.0/guides/creating_gem.html
https://guides.rubygems.org/make-your-own-gem/

Some unofficial howtos may also be useful. 
https://dev.to/k_penguin_sato/how-to-create-your-own-gem-4ei1

Unlike "biogem" command, "bundle gem" command does not create
Git repository. If you want to create git repository and push
it to GitHub, please see GitHub documentation.
https://guides.github.com/activities/hello-world/

Gem packages whose package names contain "bio" or biological terms,
whose package descriptions suggest biology, and/or whose dependency
contain bio (BioRuby) or biological packages will be listed on
http://biogems.info/ .

Thanks,

Naohisa Goto
ngoto at gen-info.osaka-u.ac.jp

On Sun, 28 Jul 2019 08:49:22 +0000 (UTC)
Sishuo Wang <sishuo.wang at aol.com> wrote:

> Hi all,
> I was trying to create my first bioruby plugin following the instructions at http://www.biogems.info/doc/Tutorial_rdoc.html.
> I started with the command "biogem foo", and edited the description and summary of the file Rakefile. However, when I tried "bundle exec rake git:release", I got the following message:The git source https://github.com/technicalpickles/jeweler.git is not yet checked out. Please run `bundle install` before trying to start your application
> 
> I then tried with "bundle install", but was only told:Your Gemfile lists the gem rdoc (~> 3.12) more than once.You should probably keep only one of them.Remove any duplicate entries and specify the gem only once (per group).While it's not a problem now, it could cause errors if you change the version of one of them later.Fetching https://github.com/technicalpickles/jeweler.gitFetching gem metadata from https://rubygems.org/........Fetching gem metadata from https://rubygems.org/.Could not find gem 'jeweler (~> 1.8.4)' in https://github.com/technicalpickles/jeweler.git (at master at 2ab8630).The source contains 'jeweler' at: 2.3.9
> Would anyone please mind helping me with it?
> Thanks in advance.
> Best,Sishuo
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