[BioRuby] bio-assembly

Chase Miller chmille4 at gmail.com
Wed Jan 12 18:37:19 UTC 2011

Hi All,

Quick update on the bio-assembly plugin.

Francesco has added support for CAF files.  According to his preliminary
tests it can handle a 27k contig 454 file in about a minute.  He also
improved the performance overall so now the ace parser can process a 70 mb
file in about 10 seconds. Nice work!

If there are any requests for parsers or functionality, let us know.

source code: https://github.com/chmille4/bioruby-assembly


gem: https://rubygems.org/gems/bio-assembly


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