[BioRuby-cvs] bioruby/test/functional/bio/io test_ensembl.rb, 1.1, 1.2
Mitsuteru C. Nakao
nakao at dev.open-bio.org
Thu Mar 29 05:50:45 UTC 2007
Update of /home/repository/bioruby/bioruby/test/functional/bio/io
In directory dev.open-bio.org:/tmp/cvs-serv9824/test/functional/bio/io
Modified Files:
test_ensembl.rb
Log Message:
* Fixed bugs in exportview argument parsing.
Index: test_ensembl.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/test/functional/bio/io/test_ensembl.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** test_ensembl.rb 29 Mar 2007 05:24:59 -0000 1.1
--- test_ensembl.rb 29 Mar 2007 05:50:43 -0000 1.2
***************
*** 71,74 ****
--- 71,84 ----
end
+ def test_tab_exportview_with_named_args
+ line = "seqname\tsource\tfeature\tstart\tend\tscore\tstrand\tframe\tgene_id\ttranscript_id\texon_id\tgene_type\nchromosome:NCBI36:4:1149206:1149209:1\tEnsembl\tGene\t-839\t2747\t.\t+\t.\tENSG00000206158\tENST00000382964\tENSE00001494097\tKNOWN_protein_coding\n"
+ gff = @serv.exportview(:seq_region_name => 4,
+ :anchor1 => 1149206,
+ :anchor2 => 1149209,
+ :options => ['gene'],
+ :format => 'tab')
+ assert_equal(line, gff)
+ end
+
end
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