[BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.58,1.59

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/io
In directory dev.open-bio.org:/tmp/cvs-serv4757/lib/bio/io

Modified Files:
	flatfile.rb 
Log Message:
* KEGG::ORTHOLOG is renamed to KEGG::ORTHOLOGY


Index: flatfile.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/io/flatfile.rb,v
retrieving revision 1.58
retrieving revision 1.59
diff -C2 -d -r1.58 -r1.59
*** flatfile.rb	5 Apr 2007 23:35:41 -0000	1.58
--- flatfile.rb	14 Apr 2007 02:29:45 -0000	1.59
***************
*** 1146,1150 ****
            brite    = RuleRegexp[ 'Bio::KEGG::BRITE',
              /^Entry           [A-Z0-9]+/ ],
!           ortholog = RuleRegexp[ 'Bio::KEGG::ORTHOLOG',
              /^ENTRY       .+ KO\s*/ ],
            drug     = RuleRegexp[ 'Bio::KEGG::DRUG',
--- 1146,1150 ----
            brite    = RuleRegexp[ 'Bio::KEGG::BRITE',
              /^Entry           [A-Z0-9]+/ ],
!           orthology = RuleRegexp[ 'Bio::KEGG::ORTHOLOGY',
              /^ENTRY       .+ KO\s*/ ],
            drug     = RuleRegexp[ 'Bio::KEGG::DRUG',
***************
*** 1250,1255 ****
          #aaindex.is_prior_to litdb
          #litdb.is_prior_to brite
!         brite.is_prior_to ortholog
!         ortholog.is_prior_to drug
          drug.is_prior_to glycan
          glycan.is_prior_to enzyme
--- 1250,1255 ----
          #aaindex.is_prior_to litdb
          #litdb.is_prior_to brite
!         brite.is_prior_to orthology
!         orthology.is_prior_to drug
          drug.is_prior_to glycan
          glycan.is_prior_to enzyme