[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/double_stranded aligned_strands.rb, 1.4, 1.5 cut_location_pair.rb, 1.7, 1.8 cut_location_pair_in_enzyme_notation.rb, 1.5, 1.6 cut_locations.rb, 1.4, 1.5 cut_locations_in_enzyme_notation.rb, 1.5, 1.6

Thu Apr 5 23:35:44 UTC 2007

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded
In directory dev.open-bio.org:/tmp/cvs-serv20013/lib/bio/util/restriction_enzyme/double_stranded

Modified Files:
	aligned_strands.rb cut_location_pair.rb 
	cut_location_pair_in_enzyme_notation.rb cut_locations.rb 
	cut_locations_in_enzyme_notation.rb 
Log Message:
Standardize on The Ruby License

Index: aligned_strands.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** aligned_strands.rb	4 Apr 2007 18:07:44 -0000	1.4
--- aligned_strands.rb	5 Apr 2007 23:35:42 -0000	1.5
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 22,26 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # Align two SingleStrand objects and return a Result
--- 22,26 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # Align two SingleStrand objects and return a Result

Index: cut_locations.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** cut_locations.rb	4 Apr 2007 18:07:44 -0000	1.4
--- cut_locations.rb	5 Apr 2007 23:35:42 -0000	1.5
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 20,24 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # Contains an +Array+ of CutLocationPair objects.
--- 20,24 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # Contains an +Array+ of CutLocationPair objects.

Index: cut_locations_in_enzyme_notation.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** cut_locations_in_enzyme_notation.rb	4 Apr 2007 20:05:06 -0000	1.5
--- cut_locations_in_enzyme_notation.rb	5 Apr 2007 23:35:42 -0000	1.6
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 21,25 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # Inherits from DoubleStranded::CutLocations.  Contains CutLocationPairInEnzymeNotation objects.
--- 21,25 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # Inherits from DoubleStranded::CutLocations.  Contains CutLocationPairInEnzymeNotation objects.

Index: cut_location_pair_in_enzyme_notation.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** cut_location_pair_in_enzyme_notation.rb	4 Apr 2007 20:05:06 -0000	1.5
--- cut_location_pair_in_enzyme_notation.rb	5 Apr 2007 23:35:42 -0000	1.6
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 20,24 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # Inherits from DoubleStranded::CutLocationPair , stores the cut location pair in
--- 20,24 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # Inherits from DoubleStranded::CutLocationPair , stores the cut location pair in

Index: cut_location_pair.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** cut_location_pair.rb	4 Apr 2007 20:05:06 -0000	1.7
--- cut_location_pair.rb	5 Apr 2007 23:35:42 -0000	1.8
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 20,24 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # Stores a single cut location pair in 0-based index notation for use with
--- 20,24 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # Stores a single cut location pair in 0-based index notation for use with