[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme analysis.rb, 1.16, 1.17 analysis_basic.rb, 1.11, 1.12 cut_symbol.rb, 1.4, 1.5 double_stranded.rb, 1.9, 1.10 single_strand.rb, 1.5, 1.6 single_strand_complement.rb, 1.3, 1.4 string_formatting.rb, 1.4, 1.5

Thu Apr 5 23:35:44 UTC 2007

Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme
In directory dev.open-bio.org:/tmp/cvs-serv20013/lib/bio/util/restriction_enzyme

Modified Files:
	analysis.rb analysis_basic.rb cut_symbol.rb double_stranded.rb 
	single_strand.rb single_strand_complement.rb 
	string_formatting.rb 
Log Message:
Standardize on The Ruby License

Index: analysis_basic.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis_basic.rb,v
retrieving revision 1.11
retrieving revision 1.12
diff -C2 -d -r1.11 -r1.12
*** analysis_basic.rb	4 Apr 2007 20:10:31 -0000	1.11
--- analysis_basic.rb	5 Apr 2007 23:35:42 -0000	1.12
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 41,45 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  class Analysis
--- 41,45 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  class Analysis

Index: string_formatting.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/string_formatting.rb,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** string_formatting.rb	4 Apr 2007 18:07:43 -0000	1.4
--- string_formatting.rb	5 Apr 2007 23:35:42 -0000	1.5
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 19,23 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  module StringFormatting
--- 19,23 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  module StringFormatting

Index: cut_symbol.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/cut_symbol.rb,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** cut_symbol.rb	1 Jan 2007 05:07:04 -0000	1.4
--- cut_symbol.rb	5 Apr 2007 23:35:42 -0000	1.5
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 19,23 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # = Usage
--- 19,23 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # = Usage

Index: single_strand_complement.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/single_strand_complement.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** single_strand_complement.rb	4 Apr 2007 18:07:43 -0000	1.3
--- single_strand_complement.rb	5 Apr 2007 23:35:42 -0000	1.4
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 19,23 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # A single strand of restriction enzyme sequence pattern with a 3' to 5' orientation.
--- 19,23 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # A single strand of restriction enzyme sequence pattern with a 3' to 5' orientation.

Index: double_stranded.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/double_stranded.rb,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10
*** double_stranded.rb	4 Apr 2007 18:07:43 -0000	1.9
--- double_stranded.rb	5 Apr 2007 23:35:42 -0000	1.10
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 28,32 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # A pair of SingleStrand and SingleStrandComplement objects with methods to
--- 28,32 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # A pair of SingleStrand and SingleStrandComplement objects with methods to

Index: single_strand.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/single_strand.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** single_strand.rb	4 Apr 2007 20:05:05 -0000	1.5
--- single_strand.rb	5 Apr 2007 23:35:42 -0000	1.6
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 22,26 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  # A single strand of restriction enzyme sequence pattern with a 5' to 3' 
--- 22,26 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  # A single strand of restriction enzyme sequence pattern with a 5' to 3' 

Index: analysis.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis.rb,v
retrieving revision 1.16
retrieving revision 1.17
diff -C2 -d -r1.16 -r1.17
*** analysis.rb	4 Apr 2007 18:07:43 -0000	1.16
--- analysis.rb	5 Apr 2007 23:35:42 -0000	1.17
***************
*** 4,8 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  #  $Id$
--- 4,8 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  #  $Id$
***************
*** 18,22 ****
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   Distributes under the same terms as Ruby
  #
  class Analysis
--- 18,22 ----
  # Author::    Trevor Wennblom  <mailto:trevor at corevx.com>
  # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
! # License::   The Ruby License
  #
  class Analysis