[BioRuby-cvs] bioruby/lib/bio/appl/spidey report.rb,1.8,1.9

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio/appl/spidey
In directory pub.open-bio.org:/tmp/cvs-serv384/lib/bio/appl/spidey

Modified Files:
	report.rb 
Log Message:
* changed license to Ruby's.
* added a new constant DELIMITER_OVERRUN for Bio::FlatFile.


Index: report.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/spidey/report.rb,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** report.rb	18 Dec 2005 15:58:41 -0000	1.8
--- report.rb	22 Feb 2006 08:46:15 -0000	1.9
***************
*** 3,23 ****
  #
  # Copyright:: Copyright (C) 2004 GOTO Naohisa <ng at bioruby.org>
! # License::   LGPL
! #
! #--
! #  This library is free software; you can redistribute it and/or
! #  modify it under the terms of the GNU Lesser General Public
! #  License as published by the Free Software Foundation; either
! #  version 2 of the License, or (at your option) any later version.
! #
! #  This library is distributed in the hope that it will be useful,
! #  but WITHOUT ANY WARRANTY; without even the implied warranty of
! #  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
! #  Lesser General Public License for more details.
! #
! #  You should have received a copy of the GNU Lesser General Public
! #  License along with this library; if not, write to the Free Software
! #  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307  USA
! #++
  #
  #  $Id$
--- 3,7 ----
  #
  # Copyright:: Copyright (C) 2004 GOTO Naohisa <ng at bioruby.org>
! # License::   Ruby's
  #
  #  $Id$
***************
*** 45,48 ****
--- 29,34 ----
  
      # Spidey report parser class.
+     # Please see bio/appl/spidey/report.rb for details.
+     #
      # Its object may contain some Bio::Spidey::Report::Hit objects.
      class Report #< DB
***************
*** 53,56 ****
--- 39,45 ----
        # Delimiter of each entry. Bio::FlatFile uses it.
        DELIMITER = RS = "\n--SPIDEY "
+ 
+       # (Integer) excess read size included in DELIMITER.
+       DELIMITER_OVERRUN = 9 # "--SPIDEY ".length
  
        # Creates a new Bio::Spidey::Report object from String.