[BioRuby-cvs] bioruby/bin br_bioflat.rb,1.15,1.16

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/bin
In directory pub.open-bio.org:/tmp/cvs-serv32441/bin

Modified Files:
	br_bioflat.rb 
Log Message:
changed STDERR to $stderr


Index: br_bioflat.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/bin/br_bioflat.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** br_bioflat.rb	9 Feb 2006 16:29:41 -0000	1.15
--- br_bioflat.rb	22 Feb 2006 07:01:05 -0000	1.16
***************
*** 140,144 ****
  
      else
!       STDERR.print "Warning: ignoring invalid option #{x.inspect}\n"
      end
    end
--- 140,144 ----
  
      else
!       $stderr.print "Warning: ignoring invalid option #{x.inspect}\n"
      end
    end
***************
*** 180,186 ****
    db = Bio::FlatFileIndex.open(dbname)
    ARGV.each do |key|
!     STDERR.print "Searching for \'#{key}\'...\n"
      #r = db.search(key)
!     #STDERR.print "OK, #{r.size} entry found\n"
      #if r.size > 0 then
      #  print r
--- 180,186 ----
    db = Bio::FlatFileIndex.open(dbname)
    ARGV.each do |key|
!     $stderr.print "Searching for \'#{key}\'...\n"
      #r = db.search(key)
!     #$stderr.print "OK, #{r.size} entry found\n"
      #if r.size > 0 then
      #  print r
***************
*** 193,201 ****
        end
      rescue RuntimeError
!       STDERR.print "ERROR: #{$!}\n"
        next
      end
      r = [] unless r
!     STDERR.print "OK, #{r.size} entry found\n"
      r.each do |i|
        print db.search_primary(i)
--- 193,201 ----
        end
      rescue RuntimeError
!       $stderr.print "ERROR: #{$!}\n"
        next
      end
      r = [] unless r
!     $stderr.print "OK, #{r.size} entry found\n"
      r.each do |i|
        print db.search_primary(i)
***************
*** 241,252 ****
      end
      if k then
!       STDERR.print "Format: #{k.to_s}\n"
        format = k
      else
!       STDERR.print "ERROR: couldn't determine file format\n"
        return
      end
    end
!   STDERR.print "Namespaces: (first line: primary namespace)\n"
    if format then
      parser = Bio::FlatFileIndex::Indexer::Parser.new(format)
--- 241,252 ----
      end
      if k then
!       $stderr.print "Format: #{k.to_s}\n"
        format = k
      else
!       $stderr.print "ERROR: couldn't determine file format\n"
        return
      end
    end
!   $stderr.print "Namespaces: (first line: primary namespace)\n"
    if format then
      parser = Bio::FlatFileIndex::Indexer::Parser.new(format)