[BioRuby-cvs] bioruby/test/data/aaindex DAYM780301, NONE, 1.1 HENS920102, 1.1, NONE
Mitsuteru C. Nakao
nakao at pub.open-bio.org
Wed Feb 22 05:07:38 UTC 2006
Update of /home/repository/bioruby/bioruby/test/data/aaindex
In directory pub.open-bio.org:/tmp/cvs-serv32206/test/data/aaindex
Added Files:
DAYM780301
Removed Files:
HENS920102
Log Message:
* test_aaindex.rb: changed test data (HENS920102 -> DAYM780301) for Bio::AAindex2.
* DAYM780301: newly added.
* HENS920102: removed.
--- HENS920102 DELETED ---
--- NEW FILE: DAYM780301 ---
H DAYM780301
D Log odds matrix for 250 PAMs (Dayhoff et al., 1978)
R
A Dayhoff, M.O., Schwartz, R.M. and Orcutt, B.C.
T A model of evolutionary change in proteins
J In "Atlas of Protein Sequence and Structure", Vol.5, Suppl.3 (Dayhoff,
M.O., ed.), National Biomedical Research Foundation, Washington, D.C.,
p.352 (1978)
M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV
2.
-2. 6.
0. 0. 2.
0. -1. 2. 4.
-2. -4. -4. -5. 12.
0. 1. 1. 2. -5. 4.
0. -1. 1. 3. -5. 2. 4.
1. -3. 0. 1. -3. -1. 0. 5.
-1. 2. 2. 1. -3. 3. 1. -2. 6.
-1. -2. -2. -2. -2. -2. -2. -3. -2. 5.
-2. -3. -3. -4. -6. -2. -3. -4. -2. 2. 6.
-1. 3. 1. 0. -5. 1. 0. -2. 0. -2. -3. 5.
-1. 0. -2. -3. -5. -1. -2. -3. -2. 2. 4. 0. 6.
-4. -4. -4. -6. -4. -5. -5. -5. -2. 1. 2. -5. 0. 9.
1. 0. -1. -1. -3. 0. -1. -1. 0. -2. -3. -1. -2. -5. 6.
1. 0. 1. 0. 0. -1. 0. 1. -1. -1. -3. 0. -2. -3. 1. 2.
1. -1. 0. 0. -2. -1. 0. 0. -1. 0. -2. 0. -1. -3. 0. 1. 3.
-6. 2. -4. -7. -8. -5. -7. -7. -3. -5. -2. -3. -4. 0. -6. -2. -5. 17.
-3. -4. -2. -4. 0. -4. -4. -5. 0. -1. -1. -4. -2. 7. -5. -3. -3. 0. 10.
0. -2. -2. -2. -2. -2. -2. -1. -2. 4. 2. -2. 2. -1. -1. -1. 0. -6. -2. 4.
//
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