[BioRuby-cvs] bioruby/doc Tutorial.rd,1.1,1.2

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/doc
In directory pub.open-bio.org:/tmp/cvs-serv32139

Modified Files:
	Tutorial.rd 
Log Message:
* removed Japanese characters in lines 317, 319, 321 and 763.
* added credit of translator.
* fixed TRANSLATOR'S NOTE in line 264.
* changed "and" to "or" in line 1014.


Index: Tutorial.rd
===================================================================
RCS file: /home/repository/bioruby/bioruby/doc/Tutorial.rd,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** Tutorial.rd	31 Aug 2005 12:35:41 -0000	1.1
--- Tutorial.rd	31 Aug 2005 13:16:03 -0000	1.2
***************
*** 5,8 ****
--- 5,11 ----
    Copyright (C) 2001-2003 KATAYAMA Toshiaki <k at bioruby.org>
  
+   Translated into English: Naohisa Goto <ng at bioruby.org>
+                            (to be written...)
+ 
  = How to use BioRuby
  
***************
*** 262,266 ****
  Bio::Sequence#splicing splices subsequence from nucleic acid sequence
  according to location information used in GenBank, EMBL and DDBJ.
! (TRANSLATOR'S NOTE: added EMBL and GenBank.) When translation
  table is different from 0(universal), or first codon is not "atg" or
  the protein contain selenocysteine, the two amino acid sequences will
--- 265,269 ----
  Bio::Sequence#splicing splices subsequence from nucleic acid sequence
  according to location information used in GenBank, EMBL and DDBJ.
! (TRANSLATOR'S NOTE: EMBL and DDBJ should be added in Japanese document.) When translation
  table is different from 0(universal), or first codon is not "atg" or
  the protein contain selenocysteine, the two amino acid sequences will
***************
*** 315,323 ****
      ff = Bio::FlatFile.auto(ARGF)
      ff.each_entry do |entry|
-       p entry.entry_id          # ¥¨¥ó¥È¥ê¤Î ID
        p entry.entry_id          # identifier of the entry
-       p entry.definition        # ¥¨¥ó¥È¥ê¤ÎÀâÌÀʸ
        p entry.definition        # definition of the entry
-       p entry.seq               # ÇÛÎó¥Ç¡¼¥¿¥Ù¡¼¥¹¤Î¾ì¹ç
        p entry.seq               # sequence data of the entry
      end
--- 318,323 ----
***************
*** 761,765 ****
      \documentclass{jarticle}
      \begin{document}
!     foo bar KEGG database~\cite{PMID:10592173} baz hoge fuga¡£
  
      \begin{thebibliography}{00}
--- 761,765 ----
      \documentclass{jarticle}
      \begin{document}
!     foo bar KEGG database~\cite{PMID:10592173} baz hoge fuga.
  
      \begin{thebibliography}{00}
***************
*** 1012,1016 ****
  to be written...
  
! (TRANSLATOR'S NOTE: No additional libraries are needed with Ruby 1.8.1 and later.)
  
  =end
--- 1012,1016 ----
  to be written...
  
! (TRANSLATOR'S NOTE: No additional libraries are needed with Ruby 1.8.1 or later.)
  
  =end