[Biopython] Reading in chimera generated files
Patrick McGrath
ptmcgrat at gmail.com
Tue May 5 10:57:08 UTC 2015
Hello,
I am trying to use Bio.PDB to read in a PDB file generated from matchmaker
in chimera. It seems that Chimera changes the HG to Hg and ZN to Zn in the
last column of the pdb file which causes an error:
assert not element or element == element.upper(), element
AssertionError: Hg
Is there any solution to this besides creating a script to manually edit
the pdb file generated by chimera?
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