[Biopython] codon optimisation script

[Peter Cock]

Hi Ryan,

Is any of the codon usage code under Bio.SeqUtils of relevance? e.g.

https://github.com/biopython/biopython/blob/master/Bio/SeqUtils/CodonUsage.py

Peter


On Mon, May 4, 2015 at 6:11 PM, Ryan J. Hope <r.j.hope81 at gmail.com> wrote:
> Does anyone know of a python script for codon optimization of a FASTA file
> using a codon usage table as a reference?
>
> Hi, I need a template Python script (or a complete script or perhaps just
> some advice) for conversion of a gene belonging to R. eutrophia for
> heterologous expression in C. acetobutylicum. I have a codon usage table as
> a .txt file copied from Kazusa and the gene I'm interested in as FASTA. If
> anyone has a .py file they can upload that would be great :)
>
> Kind regards,
> Ryan H.
>
> (previously posted on research gate)
>
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