[Biopython] "raw" genbank locations?

Cedar McKay cmckay at u.washington.edu
Thu Mar 10 01:09:55 UTC 2011


Hello all. Biopython continues to be a lifesaver.

I'm trying to get the "raw" genbank locations for a downstream application after parsing a genbank file. Is there any way to get at this (or reproduce it)? As it is, the SeqRecord feature has start and stop information for the whole feature, and a list of sub-features each with it's own start and stops. I'm looking for one concise text string the describes the entire feature location, much like the original raw genbank locations do. 

I searched the archives, but nothing popped into view.

Thanks for your help!

best,
Cedar






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