[BioPython] os.system problem with clustalw (on Windows)
Emanuel Hey
jodyhey at yahoo.com
Thu Jul 26 17:38:16 UTC 2007
I'm avoiding directories with space names, but I just
did a quick check.
This works
>>> align = do_alignment(cline)
>>> faa_filename =
'C:\\temp\\pythonplay\\hcgplay\\space test\\data.faa'
>>> cline = MultipleAlignCL(faa_filename)
>>> align = do_alignment(cline)
jhey
--- Peter <biopython at maubp.freeserve.co.uk> wrote:
> Emanuel Hey wrote:
> > Peter
> >
> > both of these now work.
> >
> > faa_filename = 'data.faa'
> > cline = MultipleAlignCL(faa_filename)
> > align = do_alignment(cline)
> >
> > faa_filename =
> > 'C:\\temp\\pythonplay\\hcgplay\\data.faa'
> > cline = MultipleAlignCL(faa_filename)
> > align = do_alignment(cline)
> >
> > Thanks!
> >
> > jhey
>
> Oh good :)
>
> Have you tried file names and/or paths with spaces
> in them?
>
> Peter
>
>
____________________________________________________________________________________
Shape Yahoo! in your own image. Join our Network Research Panel today! http://surveylink.yahoo.com/gmrs/yahoo_panel_invite.asp?a=7
More information about the Biopython
mailing list