[BioPython] Re: about Prosite package

[Jeffrey Chang]

Hi Olivier,

Thanks for the report.  Which version of Biopython are you using?  It 
should have been fixed in Biopython 1.10.  If you are using an earlier 
version, please upgrade to the latest version.  Or, at least, you 
should upgrade the Bio/Prosite/__init__.py file.

Jeff


On Friday, March 14, 2003, at 05:47  AM, olivier amanatian wrote:

> Hello,
>
> I'm a poor Biopython beginner and I have met this
> problem:I wanted to get this Prosite pattern  PS50893
> using the Prosite package and I get this error
>
> File"/local/lib/python2.2/site-packages/Bio/Prosite/__init__.py",
> line 599, in comment
>     raise SyntaxError, "Unknown qual %s in comment
> line\n%s" % \
> SyntaxError: Unknown qual '/MATRIX_TYPE' in comment
> line
> CC   /MATRIX_TYPE=protein_domain;
>
>
> Looking at the code of Prosite/__init__.py/class
> _RecordConsumer/def comment, I've seen that the
> comment
>  "/MATRIX_TYPE" wasn't proposed.
>
> I hope this will help you to make Biopython more
> effective
>
> Cordially
>
> Olivier Amanatian
>
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