[BioPython] aligning with clustalw fails

[Brad Chapman]

Hi Greg, Iddo;
Thanks for the analysis of the problem and fixes. I've checked the
change to the regular expression into CVS. Sweet. Quick turnaround
time today.

Brad

> I replied to Karin personally about this, but I suppose I should have sent my
> message to the whole list. In any case, the problem can easily be fixed:
> 
> Update the regex in line 31 of Bio/Clustalw/clustal_format.py to:
> 
> Martel.Re("[-a-zA-Z:;^_'\",\#\|\[\]\(\)\/\.\d\+]+"))
> 
>  - Greg
> 
> Quoting Iddo Friedberg <idoerg at burnham.org>:
> 
> > Karin,
> > 
> > When I removed the "+" character on the first anoatation line, 
> > everything seemed to work fine. The "+" sign must be confusing Martel in 
> > some way. Needs to be fixed. Good catch, thanks!!
> > 
> > Iddo
> > 
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