[Biopython-dev] Blast XML Parse Improvements

[Wibowo Arindrarto]

Hi Travis,

There hasn't been any new test cases added for BLAST 2.2.30, as I
recall. Did you get the same behavior when using Bio.SearchIO to parse
it?

Best regards,
Bow

On Wed, Jul 29, 2015 at 7:12 AM, Travis Wrightsman <twrig002 at ucr.edu> wrote:
> Biopython Devs,
>
> I was trying to parse through a tblastn XML output with multiple queries in
> the query file and it was generating a BLAST record object for each contig
> in the subject file instead of each run. Is this the intended behavior or
> has this not been updated for ncbi tools 2.2.30?
>
> If it needs to be updated or finished, I'm more than happy to rewrite or
> update some of the code in NCBIXML for the latest version.
>
> -Travis
>
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