[Biopython-dev] Releasing Biopython 1.62 this week?

Wibowo Arindrarto w.arindrarto at gmail.com
Tue Aug 27 09:41:32 UTC 2013

Hi Peter, everyone,

On Tue, Aug 27, 2013 at 10:43 AM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> Continuing this thread under a new title, as below, I would
> like to do the Biopython 1.62 release in the next day or two:
> http://lists.open-bio.org/pipermail/biopython-dev/2013-August/010836.html
> Peter
> On Tue, Aug 27, 2013 at 9:41 AM, Peter Cock wrote:
>> On Mon, Aug 26, 2013 at 5:04 PM, Wibowo Arindrarto wrote:
>>>> So you'd be comfortable with removing the experimental warning
>>>> for SearchIO in Biopython 1.62 final (this week if the PDB occupancy
>>>> thing is resolved)?
>>> Yes. I think all public-facing modules are ok now. There are still two
>>> issue which I consider minor, but I think should be mentioned before
>>> we lift the warning:
>>> ...
>>> Other than these, some planned features are implementing the HMMER3.1
>>> parser (which I think should not interfere with lifting the warning).
>> We'll also want to update the Tutorial as well, merging the BLAST
>> and SearchIO chapters. Let's start work on this just after releasing
>> Biopython 1.62 then, which I think we can now go ahead with :)

Ah yes. I missed the tutorial. Then yes, it should be updated as well.
If we are doing this after 1.62 is released, is worth it to aim for a
larger change (I recall there was a discussion some time ago about
porting the tutorial to Sphinx).

>> Lenna has sorted out the PDB occupancy issue, and Eric has
>> updated the PRANK unit tests.
>> I think this means we are OK to do the release in the next day
>> or two? Any objections?

No objections from me :).


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