[Biopython-dev] Codon Alignment GSoC Update

Zheng Ruan zruan1991 at gmail.com
Sun Aug 11 22:04:10 UTC 2013

Hi all,

An update of Codon Alignment Project can be found at (http://zruanweb.com/).
In the next week, I will be implementing the Maximum Likelihood method for
dN/dS ratio estimation. I do not anticipate to write any code for the
optimization and Scipy's functionality is most suitable to be used here.
This might be a new dependency for Biopython. Is it okay to add this? Or
are there some other functions in Biopython for optimization problems?

Zheng Ruan

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