[Biopython-dev] [Patch] Genbank Parser

Peter Cock p.j.a.cock at googlemail.com
Fri Sep 28 13:38:11 UTC 2012


On Fri, Sep 28, 2012 at 2:03 PM, Björn Grüning <bjoern at gruenings.eu> wrote:
> Hi,
>
> the tbl2asn tool from the ncbi creates genbank files that did not have a
> version number. Unfortunately that version number is used to fill
> consumer.data.id.
> I implemented the following fall-back:
> If there is no version information available than it takes the
> consumer.data.name for the consumer.data.id. Does that makes sense?
>
> Thanks!
> Bjoern

Can you share some example output from tbl2asn that shows
this problem? Ideally something small we could include as a
unit test.

Thanks,

Peter




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