[Biopython-dev] sff reader

Senthil Palanisami spenthil at gmail.com
Sat May 23 16:11:22 UTC 2009

You didn't sound particularly grumpy, I am just aware of the annoyances
related to people too lazy to do a quick search of through a mailing list
before spamming.

I pulled 'CA' straight out of a wgs assembler program:
I think 'frg' is the real file format name.

Senthil Palanisami

On Sat, May 23, 2009 at 4:28 AM, Peter <biopython at maubp.freeserve.co.uk>wrote:

> On Sat, May 23, 2009 at 2:48 AM, Senthil Palanisami <spenthil at gmail.com>
> wrote:
> > Sorry, I only recently joined this list - should have gone through the
> > archives first.
> Don't worry - and if I sounded grumpy, sorry - I was up late last night.
> > I have done some minimal SFF tweaking, but only by first converting them
> > to CA format.
> What do you mean by CA format? I don't recall seeing that abbreviation
> before.
> > No paired end reads yet, but I do know my PI wants me to start looking
> > at some in the next month or two.
> I haven't had any paired end 454 reads to work with personally, but I'm
> sure there are some examples available online somewhere.
> Peter

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