[Biopython-dev] [Bug 2865] Phd writer class for SeqIO

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Jul 2 09:57:19 UTC 2009


------- Comment #5 from biopython-bugzilla at maubp.freeserve.co.uk  2009-07-02 05:57 EST -------
(In reply to comment #4)
> (In reply to comment #2)
> > Following the email from David Gordon the Consed author via
> > Gordon Roberston (thanks Gordon) on the dev list
> > (http://lists.open-bio.org/pipermail/biopython-dev/2009-June/006322.html)

I've checked in those two examples and extended the parsing unit tests now.
This showed a small issue with PHD "file names" with a space in them, which
I have resolved following our convention for FASTA files. This means converting
PHD to FASTA/FASTQ/QUAL works nicely.


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