[Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2507


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
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 Attachment #998 is|0                           |1
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------- Comment #12 from biopython-bugzilla at maubp.freeserve.co.uk  2009-02-25 10:42 EST -------
Created an attachment (id=1249)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1249&action=view)
Patch to SeqRecord.py and SeqFeature.py

This updates the old patch (which no longer applied cleanly to CVS), and
implements per-letter-annotation with a restricted dictionary as discussed on
the mailing list.  The precise name for the publicly exposed
per-letter-annotation dictionary is still open to debate, here I have used
letter_annotation - see the mailing list for more:
http://lists.open-bio.org/pipermail/biopython-dev/2009-February/005340.html

This includes a lengthy doctest on the SeqRecord __getitem__ method, but
further additions to the unit tests would be wise.


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