[Biopython-dev] [Bug 2583] New: small bug in NCBIXML.py

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2583

           Summary: small bug in NCBIXML.py
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: minor
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: christen at unice.fr


Hi
When parsing an xml blast output
b_record.sc_match and b_record.sc_mismatch are returned as none

this is because the lines 
self._blast.sc_match=self._parameters.sc_match
self._blast.sc_mismatch=self._parameters.sc_mismatch

are missing in  
def _end_Iteration(self):

This is a minor bug because it is very rare that a user wants these
informations, as usually they know the parameters they used to run blast.

Best regards
Richard Christen, U of Nice, France


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