[Biopython-dev] [Bug 2531] Nexus and fasta parsers have a problem with identical taxa names

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Jun 30 17:28:25 UTC 2008


------- Comment #11 from biopython-bugzilla at maubp.freeserve.co.uk  2008-06-30 13:28 EST -------
Created an attachment (id=959)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=959&action=view)
Tentative patch to Bio/SeqIO/NexusIO.py

This seems to cope with Andrea's real input file and my two hand written ones. 
It works by taking the original_taxon_order lists, and applying the
disambiguation algorithm if needed.  Not very elegant!

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