[Biopython-dev] [Bug 2174] FDist Support in BioPython

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2174





------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2007-09-11 06:10 EST -------
I'm only commenting on the English.  All this Controller stuff sounds
complicated, but I guess its based on how FDist works.

I would clarify this:
> The FDist data format is application specific and is not used at
> all by other applications, as such, it is always necessary to
> convert from an external format. There is code to convert a GenePop
> format to FDist, here is an example of usage (along with imports that
> will be needed on examples further below):

Perhaps:
> The FDist data format is application specific and is not used at
> all by other applications, as such you will probably have to convert
> your data for use with FDist. Biopython can help you do this.
> Here is an example converting from GenePop format to FDist format
> (along with imports that will be needed on examples further below):

Small point, there/the:

Before:
>> In practice, when there number of populations is low, the mutation model
>> is stepwise and the sample size increases, fdist will not be able to
>> simulate an acceptable approximate average $F_{st}$.

After:
>> In practice, when the number of populations is low, the mutation model
>> is stepwise and the sample size increases, fdist will not be able to
>> simulate an acceptable approximate average $F_{st}$.

If you fix the there/the, then I think that can be comitted to CVS.

Would you like me or Michiel to do this for you, as you are travelling this
week?


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