[Biopython-dev] Tutorial documentation for Bio.SeqIO

Peter biopython-dev at maubp.freeserve.co.uk
Thu Mar 15 01:38:09 UTC 2007

Michiel Jan Laurens de Hoon wrote:
> I've changed the links to the example files to relative paths, and added 
> these files on the server. ...

So far I can see just "ls_orchid.fasta", "ls_orchid.gbk" and 
"opuntia.fasta" online:


To be fair, these are the only files I had explicitly named or linked 
to. I meant it would be nice to also upload and then link to:

(a) protein.aln, used (but not currently hyper-referenced) in the 
section "Creating your own substitution matrix from an alignment".

(b) m_cold.fasta, used (but not currently hyper-referenced) as an 
example input file in the Blast section, and also in the "What the heck 
in a handle?" appendix.

I think that covers all the non python files in Bio/Doc/examples/ except 
for Bio/Doc/examples/nmr/noed.xpk which does not seem to be used in the 
tutorial at the moment.


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