[Biopython-dev] [Bug 1816] Error when importing GenBank file into BioSQL database

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Mar 14 18:41:47 UTC 2007


------- Comment #10 from mcolosimo at mitre.org  2007-03-14 14:41 EST -------
(In reply to comment #8)
> > I'm guessing that you are refering to the change two years ago in
> > biopython/BioSQL/Loader.py (revision 1.16)
> I think Marc's improving on my workaround to Loader.py (rev 1.17) and taking an
> alternative approach to my fix to DBUtils.py.  The test_BioSQL.py script in CVS
> still fails though, due to an unrelated issue of the return string format for
> locations, and I still need to issue server.adaptor.commit() in MySQL5.

This does improve on your work around for bug #1921 and maybe the patch files
should be attached to that bug #. 

I couldn't repeat the error for this bug. This is an older bug and might have
been fixed in between. 

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