[Biopython-dev] [Bug 1409] Problems with Martel and setup.py

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.bioperl.org/show_bug.cgi?id=1409





------- Additional Comments From dvorak at mcs.anl.gov  2003-08-05 11:48 -------
Hello:

When I try to install, I am having similar problems.  Please see the last line
of output below.

[dvorak at jlogin2 biopython-1.21]$ python setup.py install
--prefix=/soft/apps/packages/python-biopython-1.21
running install
*** Martel *** is either not installed or out of date.

This package is required for many Biopython features.  Please install
it before you install Biopython.
You can find Martel at http://www.biopython.org/~dalke/Martel/.

Do you want to continue this installation? (y/N) y
 *** Reportlab *** is either not installed or out of date.

This package is optional, which means it is only used in a few
specialized modules in Biopython.  You probably don't need this is you
are unsure.  You can ignore this requirement, and install it later if
you see ImportErrors.
You can find Reportlab at http://www.reportlab.com/download.html.

Do you want to continue this installation? (Y/n) y
 running build
running build_py
Traceback (most recent call last):
  File "setup.py", line 387, in ?
    ext_modules=EXTENSIONS,
  File "/var/tmp/python-2.2.1-root/usr/lib/python2.2/distutils/core.py", line
138, in setup
  File "/var/tmp/python-2.2.1-root/usr/lib/python2.2/distutils/dist.py", line
893, in run_commands
  File "/var/tmp/python-2.2.1-root/usr/lib/python2.2/distutils/dist.py", line
913, in run_command
  File "setup.py", line 137, in run
    install.run(self)
  File
"/var/tmp/python-2.2.1-root/usr/lib/python2.2/distutils/command/install.py",
line 491, in run
  File "/usr/lib/python2.2/cmd.py", line 330, in run_command
    print "\n"
  File "/var/tmp/python-2.2.1-root/usr/lib/python2.2/distutils/dist.py", line
913, in run_command
  File
"/var/tmp/python-2.2.1-root/usr/lib/python2.2/distutils/command/build.py", line
107, in run
  File "/usr/lib/python2.2/cmd.py", line 330, in run_command
    print "\n"
  File "/var/tmp/python-2.2.1-root/usr/lib/python2.2/distutils/dist.py", line
913, in run_command
  File "setup.py", line 144, in run
    if not is_Martel_installed():
  File "setup.py", line 190, in is_Martel_installed
    m = can_import("Martel")
  File "setup.py", line 179, in can_import
    return __import__(module_name)
  File "Martel/__init__.py", line 78, in ?
    NoCase = Expression.NoCase
AttributeError: 'module' object has no attribute 'NoCase'




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